#include <SecondaryNeighborhoodThread.h>

Public Member Functions
	SecondaryNeighborhoodThread (const MooseMesh &mesh, const std::vector< dof_id_type > &trial_primary_nodes, const std::map< dof_id_type, std::vector< dof_id_type >> &node_to_elem_map, const unsigned int patch_size, KDTree &_kd_tree)

	SecondaryNeighborhoodThread (SecondaryNeighborhoodThread &x, Threads::split split)
	Splitting Constructor. More...

void	operator() (const NodeIdRange &range)
	Save a patch of nodes that are close to each of the secondary nodes to speed the search algorithm TODO: This needs to be updated at some point in time. More...

void	join (const SecondaryNeighborhoodThread &other)

Public Attributes
KDTree &	_kd_tree

std::vector< dof_id_type >	_secondary_nodes
	List of the secondary nodes we're actually going to keep track of. More...

std::map< dof_id_type, std::vector< dof_id_type > >	_neighbor_nodes
	The neighborhood nodes associated with each node. More...

std::set< dof_id_type >	_ghosted_elems
	Elements that we need to ghost. More...

Protected Attributes
const MooseMesh &	_mesh
	The Mesh. More...

const std::vector< dof_id_type > &	_trial_primary_nodes
	Nodes to search against. More...

const std::map< dof_id_type, std::vector< dof_id_type > > &	_node_to_elem_map
	Node to elem map. More...

unsigned int	_patch_size
	The number of nodes to keep. More...

Detailed Description

Definition at line 22 of file SecondaryNeighborhoodThread.h.

Constructor & Destructor Documentation

◆ SecondaryNeighborhoodThread() [1/2]

SecondaryNeighborhoodThread::SecondaryNeighborhoodThread	(	const MooseMesh &	mesh,
		const std::vector< dof_id_type > &	trial_primary_nodes,
		const std::map< dof_id_type, std::vector< dof_id_type >> &	node_to_elem_map,
		const unsigned int	patch_size,
		KDTree &	_kd_tree
	)

Definition at line 19 of file SecondaryNeighborhoodThread.C.

   : _kd_tree(kd_tree),
     _mesh(mesh),
     _trial_primary_nodes(trial_primary_nodes),
     _node_to_elem_map(node_to_elem_map),
     _patch_size(patch_size)
 {
 }

◆ SecondaryNeighborhoodThread() [2/2]

SecondaryNeighborhoodThread::SecondaryNeighborhoodThread	(	SecondaryNeighborhoodThread &	x,
		Threads::split	split
	)

Splitting Constructor.

Definition at line 34 of file SecondaryNeighborhoodThread.C.

   : _kd_tree(x._kd_tree),
     _mesh(x._mesh),
     _trial_primary_nodes(x._trial_primary_nodes),
     _node_to_elem_map(x._node_to_elem_map),
     _patch_size(x._patch_size)
 {
 }

Member Function Documentation

◆ join()

void SecondaryNeighborhoodThread::join ( const SecondaryNeighborhoodThread & other )

Definition at line 175 of file SecondaryNeighborhoodThread.C.

 {
   _secondary_nodes.insert(
       _secondary_nodes.end(), other._secondary_nodes.begin(), other._secondary_nodes.end());
   _ghosted_elems.insert(other._ghosted_elems.begin(), other._ghosted_elems.end());
   _neighbor_nodes.insert(other._neighbor_nodes.begin(), other._neighbor_nodes.end());
 }

◆ operator()()

void SecondaryNeighborhoodThread::operator() ( const NodeIdRange & range )

Save a patch of nodes that are close to each of the secondary nodes to speed the search algorithm TODO: This needs to be updated at some point in time.

If the hits into this data structure approach "the end" then it may be time to update

neighborSearch function takes the secondary coordinates and patch_size as input and finds the k (=patch_size) nearest neighbors to the secondary node from the trial primary node set. The indices of the nearest neighbors are stored in the array return_index.

Now see if this processor needs to keep track of this secondary and it's neighbors We're going to see if this processor owns the secondary, any of the neighborhood nodes or any of the elements connected to either set. If it does then we're going to ghost all of the elements connected to the secondary node and the neighborhood nodes to this processor. This is a very conservative approach that we might revisit later.

Definition at line 51 of file SecondaryNeighborhoodThread.C.

 {
   unsigned int patch_size =
       std::min(_patch_size, static_cast<unsigned int>(_trial_primary_nodes.size()));
 
   std::vector<std::size_t> return_index(patch_size);
 
   for (const auto & node_id : range)
   {
     const Node & node = _mesh.nodeRef(node_id);
     Point query_pt;
     for (const auto i : make_range(Moose::dim))
       query_pt(i) = node(i);
 
     _kd_tree.neighborSearch(query_pt, patch_size, return_index);
 
     std::vector<dof_id_type> neighbor_nodes(return_index.size());
     for (unsigned int i = 0; i < return_index.size(); ++i)
       neighbor_nodes[i] = _trial_primary_nodes[return_index[i]];
 
     processor_id_type processor_id = _mesh.processor_id();
 
     bool need_to_track = false;
 
     if (_mesh.nodeRef(node_id).processor_id() == processor_id)
       need_to_track = true;
     else
     {
       {
         auto node_to_elem_pair = _node_to_elem_map.find(node_id);
         if (node_to_elem_pair != _node_to_elem_map.end())
         {
           const std::vector<dof_id_type> & elems_connected_to_node = node_to_elem_pair->second;
 
           // See if we own any of the elements connected to the secondary node
           for (const auto & dof : elems_connected_to_node)
             if (_mesh.elemPtr(dof)->processor_id() == processor_id)
             {
               need_to_track = true;
               break; // Break out of element loop
             }
         }
       }
 
       if (!need_to_track)
       { // Now check the neighbor nodes to see if we own any of them
         for (const auto & neighbor_node_id : neighbor_nodes)
         {
           if (_mesh.nodeRef(neighbor_node_id).processor_id() == processor_id)
             need_to_track = true;
           else // Now see if we own any of the elements connected to the neighbor nodes
           {
             auto node_to_elem_pair = _node_to_elem_map.find(neighbor_node_id);
             mooseAssert(node_to_elem_pair != _node_to_elem_map.end(),
                         "Missing entry in node to elem map");
             const std::vector<dof_id_type> & elems_connected_to_node = node_to_elem_pair->second;
 
             for (const auto & dof : elems_connected_to_node)
               if (_mesh.elemPtr(dof)->processor_id() == processor_id)
               {
                 need_to_track = true;
                 break; // Break out of element loop
               }
           }
 
           if (need_to_track)
             break; // Breaking out of neighbor loop
         }
       }
     }
 
     if (need_to_track)
     {
       // Add this node as a secondary node to search in the future
       _secondary_nodes.push_back(node_id);
 
       // Set it's neighbors
       _neighbor_nodes[node_id] = neighbor_nodes;
 
       { // Add the elements connected to the secondary node to the ghosted list
         auto node_to_elem_pair = _node_to_elem_map.find(node_id);
 
         if (node_to_elem_pair != _node_to_elem_map.end())
         {
           const std::vector<dof_id_type> & elems_connected_to_node = node_to_elem_pair->second;
 
           for (const auto & dof : elems_connected_to_node)
             _ghosted_elems.insert(dof);
         }
       }
       // Now add elements connected to the neighbor nodes to the ghosted list
       for (unsigned int neighbor_it = 0; neighbor_it < neighbor_nodes.size(); neighbor_it++)
       {
         auto node_to_elem_pair = _node_to_elem_map.find(neighbor_nodes[neighbor_it]);
         mooseAssert(node_to_elem_pair != _node_to_elem_map.end(),
                     "Missing entry in node to elem map");
         const std::vector<dof_id_type> & elems_connected_to_node = node_to_elem_pair->second;
 
         for (const auto & dof : elems_connected_to_node)
           _ghosted_elems.insert(dof);
       }
     }
   }
 }